Phocaeicola dorei

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen. Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain AF14-1AC AF14-1AC.Scaf107, whole genome

Gene Summary

Adenine Count

1646125 bp

Thymine Count

1607159 bp

Guanine Count

1155492 bp

Cytosine Count

1197211 bp

Genome Length

5606424 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-70 family rna polymerase sigma factorDWW04_07125Not AvailablePositive1656526 - 165704720678.0
tonb-dependent receptorDWW04_07130Not AvailablePositive1657274 - 1660330112899.0
ragb/susd family nutrient uptake outer membrane proteinDWW04_07135Not AvailablePositive1660348 - 166194060621.4
hybrid sensor histidine kinase/response regulatorDWW04_07140Not AvailablePositive1662120 - 1666175156409.0
hypothetical proteinDWW04_07145Not AvailablePositive1666156 - 16663899115.29
hybrid sensor histidine kinase/response regulatorDWW04_07165Not AvailableNegative1667986 - 1671918149346.0
xylanaseDWW04_07170Not AvailableNegative1672051 - 167343651242.7
tonb-dependent receptorDWW04_07175Not AvailablePositive1673718 - 1676939117032.0
ragb/susd family nutrient uptake outer membrane proteinDWW04_07180Not AvailablePositive1676968 - 167880368590.4
hypothetical proteinDWW04_07185Not AvailableNegative1678827 - 16790187522.55

Displaying genes 1471 – 1480 of 23946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.