Phocaeicola dorei

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei is a Gram-negative, nonsporulating rod-shaped bacterium that thrives as a chemoheterotroph, primarily in anaerobic environments. This species has an optimal growth temperature of 37.0°C, indicating a preference for body temperature conditions that may facilitate its presence in various host-associated environments. P. dorei has been identified in multiple habitats, suggesting a degree of ecological versatility, although specific habitats have not been detailed in the available data. Its anaerobic requirement indicates that it likely plays a role in anaerobic metabolic processes, which may include fermentation or other metabolic pathways that do not rely on oxygen. Given its anaerobic nature and ability to inhabit diverse environments, P. dorei may contribute to the complex microbial communities found in the gastrointestinal tracts of various organisms. This highlights the potential for significant interactions with host metabolism and nutrient cycling within those ecosystems. Further studies are warranted to elucidate the specific ecological roles and interactions of P. dorei in its native habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei strain AF14-1AC AF14-1AC.Scaf107, whole genome

Gene Summary

Adenine Count

1646125 bp

Thymine Count

1607159 bp

Guanine Count

1155492 bp

Cytosine Count

1197211 bp

Genome Length

5606424 bp

Protein-coding Genes

4603 genes

Non-Coding Genes

112 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
class i fructose-bisphosphate aldolaseDWW04_06510Not AvailablePositive1487741 - 148879338058.5
3-phosphoshikimate 1-carboxyvinyltransferaseDWW04_06515Not AvailablePositive1488954 - 149018045934.7
phospholipaseDWW04_06520Not AvailablePositive1490185 - 149060415918.1
metal abc transporter permeaseDWW04_06525Not AvailablePositive1490665 - 149151631359.5
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeDWW04_06530Not AvailablePositive1491500 - 149192816216.2
hypothetical proteinDWW04_06535Not AvailablePositive1491989 - 14922108312.45
plasmid pria4b orf-3 family proteinDWW04_06540Not AvailableNegative1492324 - 149388360964.2
hypothetical proteinDWW04_06545Not AvailableNegative1494061 - 149439612877.8
thioredoxinDWW04_06550Not AvailableNegative1494431 - 149474511454.8
dna polymerase iii subunit alphaDWW04_06555Not AvailableNegative1494787 - 1498584143883.0

Displaying genes 1351 – 1360 of 23946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.