Alkaliphilus oremlandii OhILAs

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Natronincolaceae

Genus

Alkaliphilus

Description

Alkaliphilus oremlandii (strain OhILAs) is a versatile strict anaerobic, spore-forming, mesophillic Gram-positive bacterium phylogenetically associated with the Firmicutes. Clostridium sp. OhILAs has been renamed to Alkaliphilus oremlandii OhILAs. A. oremlandii was isolated from sediments of the Ohio River (Pittsburgh, PA). This bacterium can ferment glycerol, fructose, and lactate, as well as respire arsenate and thiosulfate. It is one of four organisms that are being sequenced by the JGI as part of the "Arsenic Genome Project" to further elucidate the microbial transformation of arsenic. Although it grows optimally at pH 8.4, 16S rRNA gene sequence analysis indicated it is an Alkaliphilus species. Alkaliphilus oremlandii OhILAs is unique in that it can tolerate high arsenate concentrations (>40 mM) and readily degrades the organoarsenical 3-nitro-4-hydroxy benzene arsonic acid (roxarsone) within 48 hours. Thus it has great potential for use in the remediation of organoarsenicals in poultry waste and a model organism to investigate the process. (PMID: 17328188). (EBI Integr8)

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyNatronincolaceae
GenusAlkaliphilus
SpeciesAlkaliphilus oremlandii
StrainOhILAs

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Alkaliphilus oremlandii OhILAs
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Alkaliphilus oremlandii OhILAs, complete sequence.

Gene Summary

Adenine Count

1001628 bp

Thymine Count

989412 bp

Guanine Count

573747 bp

Cytosine Count

558771 bp

Genome Length

3123558 bp

Protein-coding Genes

2979 genes

Non-Coding Genes

116 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dmt family transporterCLOS_RS15005Not AvailableNegative3100956 - 310138715336.6
recombination mediator recrCLOS_RS15010A8MKQ1Negative3101569 - 310216822108.8
ybab/ebfc family nucleoid-associated proteinCLOS_RS15015A8MKQ2Negative3102203 - 310254712298.3
dna polymerase iii subunit gamma/tauCLOS_RS15020P09122Negative3102581 - 310427263681.6
duf5711 family proteinCLOS_RS15025Not AvailableNegative3104356 - 310548342676.3
spore protease yyacCLOS_RS15030P37521Positive3105744 - 310633722031.9
d-alanyl-d-alanine carboxypeptidase family proteinCLOS_RS15035P37711Negative3106495 - 310726229924.4
d-alanine--d-serine ligase vangCLOS_RS15040B9MLC6Negative3107266 - 310831538721.4
glycopeptide resistance accessory protein vanwCLOS_RS15045Q47747Negative3108331 - 310914631383.8
hypothetical proteinCLOS_RS16130Not AvailablePositive3109830 - 311023415957.2

Displaying genes 3071 – 3080 of 3095 in total

Metabolites

190 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001142butanoateC4H7O2Chemical structure of butanoateNot available
Average87.099Da
Monoisotopic87.045153045Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 190 metabolites

Health Effects

No health effects information available for this bacterium.