Mycolicibacterium vanbaalenii PYR-1

Gram-positiveRodNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Mycobacteriaceae

Genus

Mycolicibacterium

Description

Mycolicibacterium vanbaalenii PYR-1 is a Gram-positive, rod-shaped bacterium characterized by its single-cell arrangement and its classification as a chemoorganotroph. This organism thrives optimally at a temperature of 24.0°C, suggesting a preference for moderate environmental conditions. As an aerobic microbe, M. vanbaalenii PYR-1 requires oxygen for its metabolic processes, which aligns with its habitat in sediment environments where oxygen is typically available. The ability of this bacterium to utilize organic compounds for energy highlights its role in biogeochemical cycles within its sedimentary habitat. This trait may facilitate the breakdown of complex organic materials, contributing to nutrient cycling and the maintenance of sediment health. Given its ecological niche, M. vanbaalenii PYR-1 may also play a significant role in the degradation of pollutants in sediment, which could be of interest for bioremediation strategies. Overall, the physiological traits of Mycolicibacterium vanbaalenii PYR-1 indicate it is well-adapted to its sedimentary environment, where it likely participates actively in the complex interactions of microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycolicibacterium
SpeciesMycolicibacterium austroafricanum
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Mycolicibacterium vanbaalenii PYR-1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature24
Temperature rangeMesophilic
HabitatSediment
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Mycolicibacterium vanbaalenii PYR-1

Accession NumberNC_008726.1

Gene Summary

Adenine Count

1047131 bp

Thymine Count

1043696 bp

Guanine Count

2197949 bp

Cytosine Count

2203089 bp

Genome Length

6491865 bp

Protein-coding Genes

6170 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Isxac2 transposaseMVAN_RS12545Not Available+2649720 - 265121955216.3
aaa family atpaseMVAN_RS12550Not Available+2651258 - 265203127170.8
AttlNot AvailableNot Available+2652038 - 2652049Not Available
helix-turn-helix domain-containing proteinMVAN_RS12555Not Available+2652198 - 26523957290.56
hypothetical proteinMVAN_RS12560Not Available-2652405 - 265282714786.8
three-helix bundle dimerization domain-containing proteinMVAN_RS12565Not Available-2653070 - 26533068657.4
hypothetical proteinMVAN_RS12570Not Available-2653401 - 265369411150.7
Is1595 transposaseMVAN_RS12575Not Available-2653746 - 265474737744.7
IntegraseMVAN_RS12580Not Available+2655123 - 265628042633.4
Helix-turn-helix dna binding domain proteinMVAN_RS12585Not Available-2656288 - 26564766744.05

Displaying genes 1 – 10 of 6234 in total

Pathways

823 pathways

Metabolites

517 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 517 metabolites