Acidiphilium cryptum JF-5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acidocellaceae

Genus

Acidiphilium

Description

Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcidocellaceae
GenusAcidiphilium
SpeciesAcidiphilium cryptum
StrainJF-5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Acidiphilium cryptum JF-5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Acidiphilium cryptum JF-5, complete sequence.

Gene Summary

Adenine Count

540108 bp

Thymine Count

544691 bp

Guanine Count

1143168 bp

Cytosine Count

1161260 bp

Genome Length

3389227 bp

Protein-coding Genes

3128 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i-e crispr-associated protein cas6/cse3/caseACRY_RS11485Not AvailableNegative1992259 - 199294524733.7
type i-e crispr-associated protein cas5/casdACRY_RS11490Q46898Negative1992942 - 199369127578.5
type i-e crispr-associated protein cas7/cse4/cascACRY_RS11495Q46899Negative1993693 - 199480539711.2
type i-e crispr-associated protein cse2/casbACRY_RS11500Not AvailableNegative1994805 - 199534419848.6
type i-e crispr-associated protein cse1/casaACRY_RS11505Not AvailableNegative1995341 - 199693058305.6
crispr-associated helicase/endonuclease cas3ACRY_RS11510P38036Negative1997220 - 199989897900.5
is5/is1182 family transposaseACRY_RS11515Not AvailableNegative2000125 - 200045111946.4
aaa family atpaseACRY_RS11520C5CES8Negative2000602 - 200259070633.9
group i intron-associated pd-(d/e)xk endonucleaseACRY_RS11525Not AvailableNegative2002595 - 200330826544.9
nipsnap family proteinACRY_RS11530Not AvailableNegative2005182 - 200550812445.0

Displaying genes 1841 – 1850 of 3765 in total

Metabolites

1915 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 1915 metabolites

Health Effects

No health effects information available for this bacterium.