Acidiphilium cryptum JF-5

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Acetobacterales

Family

Acidocellaceae

Genus

Acidiphilium

Description

Acidiphilium cryptum (strain JF-5) is an acidophilic dissimilatory iron-reducing bacterium (DIRB) of the alpha subdivision of the Proteobacteria. This bacteria is detected in a variety of extreme low pH, radionuclide- and heavy-metal contaminated habitats where Fe(III) reduction is taking place, and may represent a significant proportion of metal-transforming organisms in these environments. Strain JF-5 serves as a model organism for facultative iron-respiring Alphaproteobacterium. It utilizes glucose as an electron donor with the concomitant reduction of soluble and solid-phase Fe(III). Major findings for this bacterium are a novel outer-membrane cytochrome c involved in iron respiration and a Cr(VI) reductase enzyme. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderAcetobacterales
FamilyAcidocellaceae
GenusAcidiphilium
SpeciesAcidiphilium cryptum
StrainJF-5

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Acidiphilium cryptum JF-5
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature35
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceHeterotroph
PathogenicityNo

Gene Summary

Adenine Count

540108 bp

Thymine Count

544691 bp

Guanine Count

1143168 bp

Cytosine Count

1161260 bp

Genome Length

3389227 bp

Protein-coding Genes

3128 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

9

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidohydrolase family proteinACRY_RS09305Not AvailableNegative1533980 - 153500238864.1
mmob/dmpm family proteinACRY_RS09310E9RFT2Negative1535080 - 153544813771.4
aromatic/alkene monooxygenase hydroxylase subunit betaACRY_RS09315Q768T3Negative1535472 - 153652739342.4
nadh:ubiquinone reductase (na(+)-transporting) subunit fACRY_RS09320Q0SJK8Negative1536570 - 153763739004.1
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alphaACRY_RS09325Q0SJK9Negative1537745 - 153941264596.7
hypothetical proteinACRY_RS09330Not AvailablePositive1539911 - 154038117963.6
hypothetical proteinACRY_RS09335Not AvailablePositive1540378 - 154068611094.3
wd40 repeat domain-containing proteinACRY_RS09340Not AvailablePositive1540703 - 154183337801.2
hypothetical proteinACRY_RS19920Not AvailablePositive1541860 - 15420366672.89
ribbon-helix-helix domain-containing proteinACRY_RS09345Not AvailableNegative1542044 - 154235211362.6

Displaying genes 1401 – 1410 of 3765 in total

Metabolites

1915 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 1915 metabolites

Health Effects

No health effects information available for this bacterium.