Rhizobium etli CFN 42 str. CFN42

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli CFN 42 str. CFN42 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This microbe is predominantly found in host-associated environments, indicating a symbiotic relationship with its host, which is commonly legumes. As a member of the Rhizobium genus, R. etli plays a crucial role in nitrogen fixation, a process that converts atmospheric nitrogen into a form that plants can utilize. This characteristic is particularly significant in agricultural contexts, where R. etli enhances soil fertility and supports plant growth by improving nutrient availability. The aerobic nature of this bacterium suggests it requires oxygen for its metabolic processes, which aligns with its habitat that typically provides sufficient oxygen levels. In addition to its agricultural importance, R. etli CFN 42 str. CFN42 may also offer insights into microbial interactions within host-associated ecosystems. Understanding its mechanisms of symbiosis and nitrogen fixation can contribute to sustainable agricultural practices and help in the development of biofertilizers. The unique traits of this strain underscore its potential utility in enhancing crop yields while reducing the reliance on chemical fertilizers, thereby promoting more environmentally friendly farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainCFN 42 CFN42

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CFN 42 str. CFN42
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium etli CFN 42 str. CFN42


Gene Summary

Adenine Count

48245 bp

Thymine Count

48325 bp

Guanine Count

77875 bp

Cytosine Count

76503 bp

Genome Length

250948 bp

Protein-coding Genes

247 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system rele/pare family toxinRHE_RS22850Not Available-84 - 40712562.1
type ii toxin-antitoxin system phd/yefm family antitoxinRHE_RS22855Not Available-407 - 68810516.8
llm class flavin-dependent oxidoreductaseRHE_RS22860Not Available+905 - 189735834.6
llm class flavin-dependent oxidoreductaseRHE_RS22865Not Available+1922 - 327149167.1
m20 aminoacylase family proteinRHE_RS22870Not Available+3290 - 448942690.5
gnat family n-acetyltransferaseRHE_RS22875Not Available+4486 - 504921112.9
amino acid abc transporter permease/atp-binding proteinRHE_RS34885Not Available+5080 - 685565158.8
abc transporter substrate-binding proteinRHE_RS22890Not Available+6946 - 789033553.7
abc transporter substrate-binding proteinRHE_RS22895Not Available+7962 - 890033491.7
llm class flavin-dependent oxidoreductaseRHE_RS22900Not Available+8918 - 995238288.8

Displaying genes 1 – 10 of 5176 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1702 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1702 metabolites