Pelobacter propionicus DSM 2379

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Desulfuromonadia

Order

Desulfuromonadales

Family

Desulfuromonadaceae

Genus

Pelobacter

Description

Pelobacter propionicus (strain DSM 2379) is an anaerobic bacteria phylogenetically associated with the delta subdivision of the Proteobacteria. This species is ubiquitous in both marine and fresh water, and in anaerobic sedmiments. It is able to convert the unsaturated hydrocarbon acetylene to acetate and ethanol via acetylaldehyde as an intermediate. Pelobacter may survive in some sediments as an Fe(III) or elemental sulfur reducer as well as growing fermentatively as an ethanol-oxidizing acetogen. Organisms that can completely oxidize organic acids with Fe(III) serving as the sole electron acceptor are responsible for most of the oxidation of organic matter in anaerobic sediments. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassDesulfuromonadia
OrderDesulfuromonadales
FamilyDesulfuromonadaceae
GenusPelobacter
SpeciesPelobacter propionicus
StrainDSM 2379

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Pelobacter propionicus DSM 2379
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Pelobacter propionicus DSM 2379, complete sequence.

Gene Summary

Adenine Count

824900 bp

Thymine Count

817411 bp

Guanine Count

1184259 bp

Cytosine Count

1181430 bp

Genome Length

4008000 bp

Protein-coding Genes

3627 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-serNot AvailableNot AvailablePositive654762 - 654849Not Available
upf0149 family proteinPPRO_RS20745Not AvailablePositive654959 - 65575329832.9
rna-binding s4 domain-containing proteinPPRO_RS03010Not AvailablePositive655778 - 6559907761.44
uroporphyrinogen decarboxylasePPRO_RS03015Not AvailablePositive656108 - 65713037800.4
wbuc family cupin fold metalloproteinPPRO_RS03020Not AvailablePositive657127 - 65760617700.2
hypothetical proteinPPRO_RS03025Not AvailablePositive657603 - 65823523756.9
pyridoxal phosphate-dependent aminotransferasePPRO_RS03030Not AvailablePositive658550 - 65985449235.2
3-isopropylmalate dehydratase small subunitPPRO_RS03035Not AvailableNegative659982 - 66050919432.2
3-isopropylmalate dehydratase large subunitPPRO_RS03040Not AvailableNegative660637 - 66192046226.0
nickel pincer cofactor biosynthesis protein larbPPRO_RS03045Not AvailablePositive662102 - 66285125934.5

Displaying genes 641 – 650 of 3737 in total

Metabolites

1770 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1770 metabolites

Health Effects

No health effects information available for this bacterium.