Syntrophobacter fumaroxidans MPOB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophobacteria

Order

Syntrophobacterales

Family

Syntrophobacteraceae

Genus

Syntrophobacter

Description

Syntropobacter fumaroxidans is a syntrophic propionate-oxidizing bacterium, which was isolated from a culture enriched from anaerobic granular sludge. It oxidizes propionate syntrophically in co-culture with the hydrogen- and formate-utilizing Methanospirillum hungateii, and is able to oxidize propionate and other organic compounds in pure culture with sulfate or fumarate as the electron acceptor. Additionally, it ferments fumarate. It is a non-motile, non-spore-forming, Gram- bacteria. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumThermodesulfobacteriota
ClassSyntrophobacteria
OrderSyntrophobacterales
FamilySyntrophobacteraceae
GenusSyntrophobacter
SpeciesSyntrophobacter fumaroxidans
StrainMPOB

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Syntrophobacter fumaroxidans MPOB
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementSingles - Pairs
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Syntrophobacter fumaroxidans MPOB, complete sequence.

Gene Summary

Adenine Count

1005043 bp

Thymine Count

993616 bp

Guanine Count

1497104 bp

Cytosine Count

1494488 bp

Genome Length

4990251 bp

Protein-coding Genes

3955 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
vanz family proteinSFUM_RS17345Not AvailableNegative4115334 - 411590921365.2
polysaccharide biosynthesis proteinSFUM_RS17350Not AvailableNegative4116263 - 411819172340.4
gdp-l-fucose synthase family proteinSFUM_RS17355Not AvailableNegative4118639 - 411973940354.2
gdp-mannose 4,6-dehydrataseSFUM_RS17360Not AvailableNegative4119759 - 412092544105.4
hypothetical proteinSFUM_RS17365Not AvailablePositive4121349 - 412176515941.3
ofa family mfs transporterSFUM_RS17375Not AvailablePositive4123011 - 412424943802.4
hypothetical proteinSFUM_RS23180Not AvailableNegative4124487 - 41246365637.62
aspartate--trna ligaseSFUM_RS17385Not AvailablePositive4125319 - 412743679502.3
amidase family proteinSFUM_RS17390Not AvailablePositive4127546 - 412876342519.8
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatbSFUM_RS17395Not AvailablePositive4128760 - 413019353462.3

Displaying genes 3361 – 3370 of 4055 in total

Metabolites

1736 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1736 metabolites

Health Effects

No health effects information available for this bacterium.