Syntrophobacter fumaroxidans MPOB

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Thermodesulfobacteriota

Class

Syntrophobacteria

Order

Syntrophobacterales

Family

Syntrophobacteraceae

Genus

Syntrophobacter

Description

Syntropobacter fumaroxidans is a syntrophic propionate-oxidizing bacterium, which was isolated from a culture enriched from anaerobic granular sludge. It oxidizes propionate syntrophically in co-culture with the hydrogen- and formate-utilizing Methanospirillum hungateii, and is able to oxidize propionate and other organic compounds in pure culture with sulfate or fumarate as the electron acceptor. Additionally, it ferments fumarate. It is a non-motile, non-spore-forming, Gram- bacteria. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Thermodesulfobacteriota
Class	Syntrophobacteria
Order	Syntrophobacterales
Family	Syntrophobacteraceae
Genus	Syntrophobacter
Species	Syntrophobacter fumaroxidans
Strain	MPOB

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	37
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Not Available
Host(s)	Not Available
Cell arrangement	Singles - Pairs
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	No

Genome Summary

Syntrophobacter fumaroxidans MPOB

Gene Summary

Adenine Count

1005043 bp

Thymine Count

993616 bp

Guanine Count

1497104 bp

Cytosine Count

1494488 bp

Genome Length

4990251 bp

Protein-coding Genes

3955 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
2_nc_021793: structural protein	SFUM_RS21695	Not Available	+	2290794 - 2291195	15039.7
hypothetical protein	SFUM_RS09680	Not Available	+	2291280 - 2291642	13992.0
hypothetical protein	SFUM_RS09685	Not Available	+	2291639 - 2291881	9352.45
hypothetical protein	SFUM_RS09690	Not Available	+	2291951 - 2292547	22047.4
Portal protein	SFUM_RS09695	Not Available	+	2292552 - 2294093	57578.1
Portal protein	SFUM_RS09700	Not Available	+	2294150 - 2295898	64167.7
Minor capsid protein	SFUM_RS21700	Not Available	+	2295895 - 2297271	52419.2
Virion morphogenesis protein	SFUM_RS21705	Not Available	+	2297372 - 2297878	18180.2
Putative protease	SFUM_RS09715	Not Available	+	2297931 - 2299010	39148.3
Hypothetical protein	SFUM_RS09720	Not Available	+	2299022 - 2299417	13434.9

Displaying genes 1 – 10 of 4055 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000217	alpha-ribazoleC14H18N2O4		Not available	Average278.3037Da Monoisotopic278.126657074Da
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P		Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000251	2-dehydropantoateC6H9O4		Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000377	(S)-malateC4H4O5		Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6		Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6		Not available	Average386.5228Da Monoisotopic386.2668389Da

Displaying 1–10 of 1683 metabolites