Nitrobacter hamburgensis X14

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter hamburgensis (strain X14 / DSM 10229) is a rod-shaped, motile, aerobe alpha-proteobacterium. N. hamburgensis is a facultatively lithoautotrophic bacterium that gains energy from the oxidation of nitrite to nitrate (nitrification). It is ubiquitous in nature and has been isolated from several environments, including soil, building sandstone, and sewage sludge. In addition to growing lithoautotrophically, Nitrobacter hamburgensis is able to grow mixotrophically with NO2 and organic components or heterotrophically solely with organic components. It can be used in biotechnology for efficient transformation of fertilizer nitrogen in agricultural systems, and is a key component of nitrogen removal in wastewater treatment. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter hamburgensis
StrainX14

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitrobacter hamburgensis X14
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceLithoautotroph - Chemolithoautotroph
PathogenicityNo

Genome Summary

Nitrobacter hamburgensis X14, complete sequence.

Gene Summary

Adenine Count

844577 bp

Thymine Count

842684 bp

Guanine Count

1360414 bp

Cytosine Count

1359292 bp

Genome Length

4406967 bp

Protein-coding Genes

4084 genes

Non-Coding Genes

168 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate aminotransferase family proteinNHAM_RS03330Q89VE9Positive703690 - 70490142657.3
ornithine carbamoyltransferaseNHAM_RS03335Q1QQG6Positive704898 - 70582433740.7
translational gtpase typaNHAM_RS03340P0A3B2Negative706114 - 70793467018.0
crp/fnr family transcriptional regulatorNHAM_RS03345Not AvailableNegative708219 - 70899828557.2
response regulatorNHAM_RS03350Not AvailablePositive709163 - 70957914925.8
nnrs family proteinNHAM_RS03355Not AvailablePositive710606 - 71178741303.1
pepsy domain-containing proteinNHAM_RS03360Not AvailableNegative711895 - 7121498858.42
cytochrome c oxidase assembly proteinNHAM_RS03365A7IPB8Positive712584 - 71351033938.5
crp/fnr family transcriptional regulatorNHAM_RS03370Not AvailablePositive713834 - 71450224837.5
duf6537 domain-containing proteinNHAM_RS03375Not AvailablePositive714499 - 71537131777.6

Displaying genes 841 – 850 of 4917 in total

Metabolites

1952 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 1952 metabolites

Health Effects

No health effects information available for this bacterium.