Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236462 bp
Thymine Count
1236558 bp
Guanine Count
1883898 bp
Cytosine Count
1879585 bp
Genome Length
6239853 bp
Protein-coding Genes
5515 genes
Non-Coding Genes
242 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| insecticide toxin tcdb middle/n-terminal region | SAMN05216248_101479 | Not Available | Negative | 523752 - 528350 | 173143.0 |
| hypothetical protein | SAMN05216248_101480 | Not Available | Negative | 528347 - 533221 | 182024.0 |
| virulence plasmid a protein | SAMN05216248_101481 | Not Available | Negative | 533258 - 535687 | 91953.1 |
| upf0176 protein | SAMN05216248_101482 | Not Available | Positive | 535923 - 536864 | 35392.0 |
| putative protein-disulfide isomerase | SAMN05216248_101483 | Not Available | Positive | 536868 - 537503 | 22919.5 |
| atp-binding cassette, subfamily c | SAMN05216248_101484 | Not Available | Positive | 537496 - 539298 | 65877.5 |
| pas domain s-box-containing protein/diguanylate cyclase (ggdef) domain-containing protein | SAMN05216248_101485 | Not Available | Positive | 539370 - 541832 | 90976.9 |
| pyrroloquinoline quinone (pqq) biosynthesis protein c | SAMN05216248_101486 | Not Available | Positive | 541879 - 542679 | 30678.7 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05216248_101487 | Not Available | Negative | 542701 - 543627 | 34645.6 |
| l-lactate dehydrogenase (cytochrome) | SAMN05216248_101488 | Not Available | Negative | 544112 - 545242 | 40743.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
