Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236462 bp
Thymine Count
1236558 bp
Guanine Count
1883898 bp
Cytosine Count
1879585 bp
Genome Length
6239853 bp
Protein-coding Genes
5515 genes
Non-Coding Genes
242 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05216248_101159 | Not Available | Positive | 160071 - 160457 | 15139.4 |
| ompa-ompf porin, oop family | SAMN05216248_101160 | Not Available | Positive | 160565 - 161545 | 34611.1 |
| uroporphyrin-iii c-methyltransferase | SAMN05216248_101161 | Not Available | Negative | 161606 - 162349 | 26308.1 |
| serine/threonine protein phosphatase prpc | SAMN05216248_101162 | Not Available | Negative | 162376 - 164046 | 62202.5 |
| mfs transporter, nnp family, nitrate/nitrite transporter | SAMN05216248_101163 | Not Available | Negative | 164046 - 165257 | 42533.7 |
| response regulator receiver and antar domain protein | SAMN05216248_101164 | Not Available | Negative | 165415 - 165990 | 21682.6 |
| nitrate/nitrite transport system substrate-binding protein | SAMN05216248_101165 | Not Available | Negative | 166004 - 167230 | 44990.3 |
| type iii secretion protein c | SAMN05216248_101166 | Not Available | Positive | 167482 - 168933 | 53841.7 |
| type iii secretion protein q | SAMN05216248_101167 | Not Available | Positive | 168949 - 169173 | 8279.33 |
| dna-binding winged helix-turn-helix (whth) domain-containing protein | SAMN05216248_101168 | Not Available | Positive | 169329 - 169724 | 14343.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
