Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236462 bp
Thymine Count
1236558 bp
Guanine Count
1883898 bp
Cytosine Count
1879585 bp
Genome Length
6239853 bp
Protein-coding Genes
5515 genes
Non-Coding Genes
242 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| autotransporter secretion outer membrane protein tama | SAMN05216248_1011003 | Not Available | Positive | 1029329 - 1031026 | 62245.5 |
| translocation and assembly module tamb | SAMN05216248_1011004 | Not Available | Positive | 1031026 - 1034697 | 130907.0 |
| outer membrane usher protein | SAMN05216248_1011005 | Not Available | Negative | 1034778 - 1037264 | 89036.7 |
| p pilus assembly protein, chaperone papd | SAMN05216248_1011006 | Not Available | Negative | 1037350 - 1038099 | 27119.3 |
| major type 1 subunit fimbrin (pilin) | SAMN05216248_1011007 | Not Available | Negative | 1038160 - 1038750 | 19666.3 |
| two component transcriptional regulator, luxr family | SAMN05216248_1011008 | Not Available | Negative | 1038835 - 1039479 | 23922.2 |
| two-component system, narl family, capsular synthesis sensor histidine kinase rcsc | SAMN05216248_1011009 | Not Available | Negative | 1039502 - 1042660 | 115534.0 |
| eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant) | SAMN05216248_1011010 | Not Available | Negative | 1042712 - 1043899 | 43125.5 |
| two-component system, narl family, capsular synthesis sensor histidine kinase rcsc | SAMN05216248_1011011 | Not Available | Negative | 1043886 - 1046672 | 102941.0 |
| dna-binding transcriptional regulator, marr family | SAMN05216248_1011012 | Not Available | Positive | 1046842 - 1047312 | 17382.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
