Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas simiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | rhizosphere; rhizosphere of wheat |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Arabidopsis, Brachypodium distachyon |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1236462 bp
Thymine Count
1236558 bp
Guanine Count
1883898 bp
Cytosine Count
1879585 bp
Genome Length
6239853 bp
Protein-coding Genes
5515 genes
Non-Coding Genes
242 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homoprotocatechuate degradation operon regulator, hpar | SAMN05216248_101820 | Not Available | Positive | 835587 - 836015 | 16421.2 |
| 4-hydroxy-2-oxoheptanedioate aldolase | SAMN05216248_101821 | Not Available | Negative | 836107 - 836907 | 28282.2 |
| 2-oxo-hept-3-ene-1,7-dioate hydratase | SAMN05216248_101822 | Not Available | Negative | 836924 - 837727 | 29177.0 |
| sugar phosphate permease | SAMN05216248_101823 | Not Available | Negative | 837739 - 839043 | 47480.0 |
| 5-carboxymethyl-2-hydroxymuconate isomerase | SAMN05216248_101824 | Not Available | Negative | 839107 - 839520 | 15391.4 |
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | SAMN05216248_101825 | Not Available | Negative | 839536 - 840393 | 31533.8 |
| 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase | SAMN05216248_101826 | Not Available | Negative | 840443 - 841903 | 52737.3 |
| 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | SAMN05216248_101827 | Not Available | Negative | 841909 - 842679 | 28663.9 |
| 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase | SAMN05216248_101828 | Not Available | Negative | 842676 - 843341 | 24142.0 |
| arac family transcriptional regulator, 4-hydroxyphenylacetate 3-monooxygenase operon regulatory protein | SAMN05216248_101829 | Not Available | Positive | 843470 - 844330 | 32628.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
