Synechococcus sp. JA-3-3Ab str. A-Prime

Gram-negativeRodMotileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. JA-3-3Ab str. A-Prime is a Gram-negative, rod-shaped cyanobacterium that typically exists as single cells. This organism is a photoautotroph, utilizing light as its primary energy source to drive photosynthesis, enabling it to thrive in specialized habitats. As a facultative organism, it exhibits flexibility in its oxygen requirements, allowing it to adapt to varying environmental conditions where oxygen levels may fluctuate. The ability of Synechococcus sp. JA-3-3Ab str. A-Prime to engage in photosynthesis positions it as a critical player in the carbon cycle within its ecological niche, potentially influencing local microbial communities and contributing to primary production. Its specialized habitat suggests adaptations that may allow it to occupy unique ecological roles, possibly in environments where other photosynthetic organisms might not be as competitive. This adaptability highlights the significance of Synechococcus sp. JA-3-3Ab str. A-Prime in understanding microbial dynamics and energy flow within specific ecosystems.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. JA-3-3Ab
StrainA-Prime

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. JA-3-3Ab str. A-Prime
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNot Available

Genome Summary

Synechococcus sp. JA-3-3Ab, complete sequence.

Gene Summary

Adenine Count

583006 bp

Thymine Count

583140 bp

Guanine Count

884334 bp

Cytosine Count

882286 bp

Genome Length

2932766 bp

Protein-coding Genes

2778 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosylaminoimidazolesuccinocarboxamide synthaseCYA_RS01125Not AvailablePositive243360 - 24413028764.4
duf2157 domain-containing proteinCYA_RS01130Not AvailablePositive244138 - 24554751224.3
hydroxymethylbilane synthaseCYA_RS01135Not AvailableNegative246676 - 24766235529.9
ylqd family proteinCYA_RS01140Not AvailablePositive247938 - 24839917594.3
glycosyltransferase family 2 proteinCYA_RS01145Not AvailablePositive248549 - 25003355184.8
ketol-acid reductoisomeraseCYA_RS01150Not AvailablePositive250107 - 25109936425.0
serine--trna ligaseCYA_RS01155Not AvailablePositive251123 - 25243048594.3
blai/meci/copy family transcriptional regulatorCYA_RS01160Not AvailablePositive252522 - 25295616228.4
m56 family metallopeptidaseCYA_RS01165Not AvailablePositive252953 - 25382532635.0
Trna-asnNot AvailableNot AvailablePositive253975 - 254046Not Available

Displaying genes 231 – 240 of 2835 in total

Metabolites

252 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 252 metabolites

Health Effects

No health effects information available for this bacterium.