Synechococcus sp. JA-3-3Ab str. A-Prime

Gram-negativeRodMotileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. JA-3-3Ab str. A-Prime is a Gram-negative, rod-shaped cyanobacterium that typically exists as single cells. This organism is a photoautotroph, utilizing light as its primary energy source to drive photosynthesis, enabling it to thrive in specialized habitats. As a facultative organism, it exhibits flexibility in its oxygen requirements, allowing it to adapt to varying environmental conditions where oxygen levels may fluctuate. The ability of Synechococcus sp. JA-3-3Ab str. A-Prime to engage in photosynthesis positions it as a critical player in the carbon cycle within its ecological niche, potentially influencing local microbial communities and contributing to primary production. Its specialized habitat suggests adaptations that may allow it to occupy unique ecological roles, possibly in environments where other photosynthetic organisms might not be as competitive. This adaptability highlights the significance of Synechococcus sp. JA-3-3Ab str. A-Prime in understanding microbial dynamics and energy flow within specific ecosystems.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. JA-3-3Ab
StrainA-Prime

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. JA-3-3Ab str. A-Prime
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic - Photoautotroph
PathogenicityNot Available

Genome Summary

Synechococcus sp. JA-3-3Ab str. A-Prime


Gene Summary

Adenine Count

583006 bp

Thymine Count

583140 bp

Guanine Count

884334 bp

Cytosine Count

882286 bp

Genome Length

2932766 bp

Protein-coding Genes

2778 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinCYA_RS00055Not AvailableNegative13486 - 1425329511.4
duf1995 family proteinCYA_RS00060Not AvailableNegative14217 - 1495727212.8
gun4 domain-containing proteinCYA_RS00065Not AvailableNegative14998 - 1546217771.2
hypothetical proteinCYA_RS00070Not AvailableNegative15513 - 1604019798.5
gvpl/gvpf family gas vesicle proteinCYA_RS13630Not AvailableNegative16201 - 1696528248.8
duf3318 domain-containing proteinCYA_RS00080Not AvailablePositive17166 - 1778623478.2
5'/3'-nucleotidase sureCYA_RS00085Not AvailableNegative17769 - 1850026372.4
type i glyceraldehyde-3-phosphate dehydrogenaseCYA_RS00090Not AvailablePositive18689 - 1972036716.2
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseCYA_RS00095Not AvailableNegative19706 - 2021218615.6
dihydroneopterin aldolaseCYA_RS00100Not AvailableNegative20219 - 2059014219.9

Displaying genes 11 – 20 of 2835 in total

Metabolites

252 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 252 metabolites

Health Effects

No health effects information available for this bacterium.