Burkholderia pseudomallei 668

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia pseudomallei is an opportunistic pathogen and a common cause of human pneumonia and fatal bacteremias in endemic areas. Clinical manifestations of B. pseudomallei infection, a disease known as melioidosis, vary greatly from an asymptomatic state, to benign pneumonitis, to acute or chronic pneumonia, or to overwhelming septicemia. Treatment of melioidosis can involve up to nine months of antibiotic therapy, and relapse of the disease is common. The latency period of the organism may vary from two days to 26 years. It is endemic in Southeast Asia and northern Australia, but has also been found in Africa, the Middle East, Europe, Central and South America. Besides humans, melioidosis can affect animals such as sheep, goats, horses, swine, dogs and cats. Transmission occurs by contact with contaminated soil and water, through skin abrasions or inhalation of dust. In northeastern Thailand, B.pseudomallei accounts for 20% of bacterial septicaemias (adapted from http://www.cdc.gov/ncidod/dbmd/diseaseinfo/melioidosis_g.htm). Strain 668 will be used for comparative genomics. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia pseudomallei
Strain668

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Burkholderia pseudomallei 668
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityYes

Genome Summary

Burkholderia pseudomallei 668 chromosome I, complete sequence.

Gene Summary

Adenine Count

623725 bp

Thymine Count

627617 bp

Guanine Count

1327378 bp

Cytosine Count

1334227 bp

Genome Length

3912947 bp

Protein-coding Genes

3520 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
immunity 52 family proteinBURPS668_RS06630Not AvailableNegative1490764 - 149147726207.2
restriction endonuclease fold toxin 5 domain-containing proteinBURPS668_RS06635Not AvailableNegative1491486 - 149207921741.9
hypothetical proteinBURPS668_RS39800Not AvailableNegative1491964 - 149243717286.3
duf4123 domain-containing proteinBURPS668_RS06645Not AvailableNegative1492430 - 149293618970.9
paar domain-containing proteinBURPS668_RS06650Not AvailableNegative1492933 - 149335814169.1
tyrosine-type recombinase/integraseBURPS668_RS31860Not AvailableNegative1493671 - 149401312474.8
sam-dependent methyltransferaseBURPS668_RS06655Not AvailablePositive1494104 - 149599668690.3
plp-dependent aminotransferase family proteinBURPS668_RS06660Not AvailableNegative1496063 - 149752352746.1
nuclear transport factor 2 family proteinBURPS668_RS06665Not AvailablePositive1497746 - 149812314407.7
tyrosine-type recombinase/integraseBURPS668_RS40785Not AvailablePositive1498147 - 149872520243.2

Displaying genes 1391 – 1400 of 6287 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

125 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.