Deinococcus geothermalis DSM 11300

Gram-positiveCocciNon-motileAerobe

Kingdom

Thermotogati

Phylum

Deinococcota

Class

Deinococci

Order

Deinococcales

Family

Deinococcaceae

Genus

Deinococcus

Description

Deinococcus geothermalis is an extremely radiation resistant, moderately thermophilic bacterium closely related to the mesophilic Deinococcus radiodurans. D. geothermalis is remarkable not only for its extreme resistance to ionizing gamma irradiation, but also for its ability to grow at temperatures as high as 55 degrees C and in the presence of chronic irradiation. The organism was isolated from thermal springs at Agnano, Naples, Italy. D. geothermalis belongs to the bacterial family Deinococcaceae, currently comprised of eight distinct nonpathogenic radiation resistant species, of which Deinococcus radiodurans strain R1 is the most characterized. Characteristics support the prospective development of this thermophilic radiophile for bioremediation of radioactive mixed waste environments. Like D. radiodurans, D. geothermalis accumulates high intracellular Mn(II) concentrations, believed to be important to its extreme resistance phenotypes. (EBI Integr8)

Taxonomy

KingdomThermotogati
PhylumDeinococcota
ClassDeinococci
OrderDeinococcales
FamilyDeinococcaceae
GenusDeinococcus
SpeciesDeinococcus geothermalis
StrainDSM11300

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Deinococcus geothermalis DSM 11300
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature47
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Tetrads
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNo

Genome Summary

Deinococcus geothermalis DSM 11300 plasmid pDGEO02, complete

Gene Summary

Adenine Count

33554 bp

Thymine Count

35049 bp

Guanine Count

68610 bp

Cytosine Count

68473 bp

Genome Length

205686 bp

Protein-coding Genes

209 genes

Non-Coding Genes

12 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDGEO_RS04085Not AvailablePositive286616 - 28705615967.9
single-stranded dna-binding proteinDGEO_RS04090Not AvailableNegative287099 - 28763519867.3
duf4357 domain-containing proteinDGEO_RS04095Not AvailablePositive287722 - 28880439410.9
hydroxyphenylacetyl-coa thioesterase paaiDGEO_RS04100Not AvailableNegative288792 - 28916313109.7
m42 family metallopeptidaseDGEO_RS04105Not AvailablePositive289216 - 29028938244.1
sir2 family nad-dependent protein deacylaseDGEO_RS04110Not AvailablePositive290273 - 29102226826.7
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribdDGEO_RS04120Not AvailablePositive291371 - 29243536865.5
riboflavin synthaseDGEO_RS04125Not AvailablePositive292438 - 29308222829.2
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/gtp cyclohydrolase iiDGEO_RS04130Not AvailablePositive293079 - 29429043573.7
6,7-dimethyl-8-ribityllumazine synthaseDGEO_RS04135Not AvailablePositive294287 - 29475116487.9

Displaying genes 521 – 530 of 3174 in total

Metabolites

99 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da

Displaying 1–10 of 99 metabolites

Health Effects

No health effects information available for this bacterium.