Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
glycoside hydrolase family 3 n-terminal domain-containing protein	VSAL_RS22005	Not Available	Positive	59510 - 61699	81111.4
antiviral radar system adenosine triphosphatase rdra	VSAL_RS22010	Not Available	Positive	62129 - 64735	99472.4
antiviral radar system adenosine deaminase rdrb	VSAL_RS22015	Not Available	Positive	64735 - 67281	97723.4
hypothetical protein	VSAL_RS22020	Not Available	Negative	67397 - 69208	70483.8
hypothetical protein	VSAL_RS22025	Not Available	Negative	69201 - 70049	31836.0
trafac clade gtpase domain-containing protein	VSAL_RS22030	Not Available	Negative	70039 - 71070	38870.8
gtpase-associated system all-helical protein gash	VSAL_RS22035	Not Available	Negative	71071 - 71598	20352.3
is30 family transposase	VSAL_RS22040	P37247	Negative	71703 - 72668	36432.1
hypothetical protein	VSAL_RS22045	Not Available	Negative	72757 - 73302	20755.5
metallophosphoesterase	VSAL_RS22050	Not Available	Negative	73303 - 74616	49887.8