Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
msha biogenesis protein mshi	VSAL_RS02655	Not Available	Positive	522657 - 524120	53950.6
type 4a pilus biogenesis protein pilo	VSAL_RS02660	Not Available	Positive	524113 - 524751	24164.3
hypothetical protein	VSAL_RS02665	Not Available	Positive	524753 - 525094	12639.1
pilus (msha type) biogenesis protein mshl	VSAL_RS02670	P45778	Positive	525107 - 526747	58372.1
exea family protein	VSAL_RS02675	P45754	Positive	526758 - 527606	32160.3
lipopolysaccharide assembly protein lapb	VSAL_RS02680	Not Available	Positive	527603 - 528676	39392.8
mate family efflux transporter	VSAL_RS02685	Q1D098	Positive	528666 - 530399	64585.3
type ii secretion system f family protein	VSAL_RS02690	Q5SK58	Positive	530410 - 531636	45493.8
type iv pilus, mannose-sensitive hemagglutinin protein mshf	VSAL_RS02695	Not Available	Positive	531657 - 532088	16415.9
prepilin-type n-terminal cleavage/methylation domain-containing protein	VSAL_RS02700	Not Available	Positive	532176 - 532739	20666.5