Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	VSAL_RS01400	P37619	Positive	270782 - 271447	25149.0
dna polymerase i	VSAL_RS01405	P00582	Positive	272158 - 274962	103692.0
ribosome biogenesis gtp-binding protein yiha/ysxc	VSAL_RS01410	Q5E8S6	Negative	275687 - 276334	24210.2
cytochrome c	VSAL_RS01415	P86052	Positive	276622 - 277239	21913.1
class i sam-dependent methyltransferase	VSAL_RS01420	Not Available	Positive	277384 - 278025	25046.5
der gtpase-activating protein yihi	VSAL_RS01425	Q5E8S3	Positive	278025 - 278573	20990.9
duf2489 domain-containing protein	VSAL_RS01430	Not Available	Positive	278576 - 279067	18885.3
oxygen-independent coproporphyrinogen iii oxidase	VSAL_RS01435	P0A1E2	Positive	279179 - 280552	52862.4
is66 family insertion sequence element accessory protein tnpa	VSAL_RS01440	Not Available	Positive	280769 - 281083	11871.4
is66 family insertion sequence element accessory protein tnpb	VSAL_RS01445	Not Available	Positive	281080 - 281427	13668.5