Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
lta synthase family protein	VSAL_RS01055	Not Available	Negative	195363 - 197342	74497.7
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase	VSAL_RS01060	Not Available	Negative	197379 - 198197	30431.2
adp-glyceromanno-heptose 6-epimerase	VSAL_RS01065	Not Available	Positive	198490 - 199431	35123.1
o-antigen ligase	VSAL_RS01070	Not Available	Positive	199602 - 200828	44842.2
lipopolysaccharide heptosyltransferase ii	VSAL_RS01075	Not Available	Positive	200825 - 201895	39074.2
lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase	VSAL_RS01080	Not Available	Positive	201889 - 203151	46587.4
polysialyltransferase family glycosyltransferase	VSAL_RS01085	Not Available	Positive	203198 - 204199	38814.7
is30-like element isvsa7 family transposase	VSAL_RS01090	Not Available	Negative	204352 - 205308	36537.4
n-acetyl sugar amidotransferase	VSAL_RS01095	Not Available	Negative	205561 - 206664	42703.7
mate family efflux transporter	VSAL_RS01100	Not Available	Negative	206661 - 207356	26042.2