Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
thioredoxin trxa	VSAL_RS01005	P0AA27	Positive	186733 - 187059	11639.1
transcription termination factor rho	VSAL_RS01010	P0A296	Positive	187298 - 188557	47040.9
hypothetical protein	VSAL_RS01015	Not Available	Positive	188701 - 189723	38103.3
4-hydroxy-3-polyprenylbenzoate decarboxylase	VSAL_RS01020	Q5E8U1	Positive	189820 - 191661	68870.7
2fe-2s iron-sulfur cluster-binding protein	VSAL_RS01025	Not Available	Positive	191658 - 191921	9677.75
nad(p)h-flavin reductase	VSAL_RS01030	P43126	Positive	192020 - 192730	26200.2
mate family efflux transporter	VSAL_RS01035	Not Available	Negative	192831 - 194320	55923.1
is66 family insertion sequence element accessory protein tnpb	VSAL_RS01040	Not Available	Negative	194392 - 194658	10546.7
is66 family insertion sequence element accessory protein tnpa	VSAL_RS01045	Not Available	Negative	194735 - 195049	11871.4
mate family efflux transporter	VSAL_RS01050	B6EPN7	Positive	195122 - 195319	7162.69