Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
tonb-dependent siderophore bisucaberin receptor bita	VSAL_RS00955	P48632	Positive	175286 - 177451	80621.7
iron-siderophore abc transporter substrate-binding protein	VSAL_RS00960	Not Available	Positive	177570 - 178520	34704.0
iron abc transporter permease	VSAL_RS00965	P23876	Positive	178517 - 179617	39292.9
iron chelate uptake abc transporter family permease subunit	VSAL_RS00970	P23877	Positive	179691 - 180632	33295.9
abc transporter atp-binding protein	VSAL_RS00975	Q81V82	Positive	180647 - 181453	29900.8
is66 family insertion sequence element accessory protein tnpa	VSAL_RS00980	Not Available	Positive	181578 - 181892	11871.4
is66 family insertion sequence element accessory protein tnpb	VSAL_RS00985	Not Available	Positive	181889 - 182236	13668.5
is66-like element isvsa2 family transposase	VSAL_RS00990	Not Available	Positive	182308 - 183795	56615.9
mate family efflux transporter	VSAL_RS00995	Q5E8U7	Negative	183831 - 185283	51201.6
atp-dependent rna helicase rhlb	VSAL_RS01000	B6EPA4	Negative	185316 - 186620	48578.1