Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Gammaproteobacteria
Order	Vibrionales
Family	Vibrionaceae
Genus	Aliivibrio
Species	Aliivibrio salmonicida
Strain	LFI1238

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Facultative
Optimal temperature	Not Available
Temperature range	Psychrophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Gadus morhua
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Heterotroph
Pathogenicity	No

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
duf484 family protein	VSAL_RS00905	Not Available	Positive	163276 - 163977	26379.6
tyrosine recombinase xerc	VSAL_RS00910	Q87KJ6	Positive	163970 - 164881	34591.7
is66 family insertion sequence element accessory protein tnpa	VSAL_RS00915	Not Available	Positive	165050 - 165364	11871.4
is66 family insertion sequence element accessory protein tnpb	VSAL_RS23330	Not Available	Positive	165361 - 165636	10567.1
is91-like element isvsa9 family transposase	VSAL_RS00925	Not Available	Negative	165725 - 166915	45965.8
hypothetical protein	VSAL_RS00930	Not Available	Positive	167270 - 167860	22156.8
hypothetical protein	VSAL_RS00935	Not Available	Positive	167877 - 169328	54863.0
pyridoxal-dependent decarboxylase	VSAL_RS00940	P71362	Positive	169900 - 171447	57166.1
lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family protein	VSAL_RS00945	Q44740	Positive	171464 - 172792	51315.8
gnat family n-acetyltransferase	VSAL_RS00950	Q47318	Positive	172803 - 175262	94230.1