Aliivibrio salmonicida LFI1238

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Aliivibrio

Description

Vibrio salmonicida is a Gram-negative marine bacterium that is a cause of cold-water vibriosis in Atlantic salmon (Salmo salar), cod and occasionally rainbow trout. It is prevalent in fish farms. Clinical signs are inappetence and erratic swimming, with anaemia and haemorrhage with a generalized septicaemia, presenting large amounts of bacterial cells in the blood of moribund or recently dead fish. The haemorrhages are mainly found in the integument surrounding the internal organs of the fish (adapted from http://www.spaquaculture.com/default.aspx?pageid=529). Vaccines are available against this pathogen. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusAliivibrio
SpeciesAliivibrio salmonicida
StrainLFI1238

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aliivibrio salmonicida LFI1238
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangePsychrophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Gadus morhua
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Aliivibrio salmonicida LFI1238 plasmid pVSAL840, complete

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i dna topoisomeraseVSAL_RS00510P45771Positive81946 - 8251521126.5
5-(carboxyamino)imidazole ribonucleotide synthaseVSAL_RS00515Q5E1R3Negative82555 - 8367041027.4
5-(carboxyamino)imidazole ribonucleotide mutaseVSAL_RS00520Q5E1R4Negative83673 - 8415816624.3
sua5/ycio/yrdc/ywlc family proteinVSAL_RS00525Q5E1R5Positive84360 - 8491720176.3
shikimate dehydrogenaseVSAL_RS00530B6EP29Positive84984 - 8580529877.9
duf1488 domain-containing proteinVSAL_RS00535Not AvailablePositive85813 - 860649587.2
gamma carbonic anhydrase family proteinVSAL_RS00540P0A9W9Negative86057 - 8660219588.8
16s ribosomal rnaNot AvailableNot AvailablePositive87118 - 88662Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive88992 - 91882Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive91978 - 92093Not Available

Displaying genes 221 – 230 of 4514 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.