Xanthomonas campestris pv. campestris str. 8004

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas campestris pv. campestris causes black rot, which affects crucifers such as Brassica and Arabidopsis. Symptoms include marginal leaf chlorosis and darkening of vascular tissue, accompanied by extensive wilting and necrosis. This bacterium is grown commercially to produce the exopolysaccharide xanthan gum, which is used to control viscosity and as a stabilizing agent in many industries. (HAMAP: XANCP)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas campestris
Strain8004

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas campestris pv. campestris str. 8004
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xanthomonas campestris pv. campestris str. 8004, complete

Gene Summary

Adenine Count

901132 bp

Thymine Count

903128 bp

Guanine Count

1667894 bp

Cytosine Count

1676554 bp

Genome Length

5148708 bp

Protein-coding Genes

4266 genes

Non-Coding Genes

214 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinXC_RS01970Not AvailableNegative453385 - 45385517238.3
pyridoxal-phosphate dependent enzymeXC_RS01975Not AvailablePositive454013 - 45497232149.8
ydcf family proteinXC_RS01980Not AvailablePositive454957 - 45557423049.9
nuclear transport factor 2 family proteinXC_RS01985Not AvailablePositive455618 - 45603715700.1
lipid a hydroxylase lpxoXC_RS01990Not AvailableNegative456197 - 45710234728.1
malonyl-acp o-methyltransferase biocXC_RS01995Not AvailableNegative457378 - 45826232039.5
sdr family oxidoreductaseXC_RS02000Not AvailableNegative458359 - 45914126738.0
pimeloyl-acp methyl ester esterase biohXC_RS02005Not AvailableNegative459934 - 46069526851.3
hypothetical proteinXC_RS02010Not AvailableNegative460727 - 46109213919.7
8-amino-7-oxononanoate synthaseXC_RS02015Not AvailableNegative461095 - 46230043260.2

Displaying genes 491 – 500 of 4480 in total

Metabolites

259 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 259 metabolites

Health Effects

No health effects information available for this bacterium.