Rhizobium rhizogenes K84

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Martinezella

Description

Rhizobium rhizogenes K84 is a Gram-negative, rod-shaped bacterium that thrives in terrestrial environments and exhibits aerobic metabolism. This microbe is known to grow optimally at a temperature of 25.0°C, which suggests a preference for moderate environmental conditions typical of many soil habitats. As a member of the Rhizobium genus, R. rhizogenes K84 is recognized for its role in forming symbiotic relationships with leguminous plants, contributing to nitrogen fixation processes that enhance soil fertility. Its Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with plants and other soil microorganisms. The aerobic nature of R. rhizogenes K84 indicates that it requires oxygen for its metabolic processes, which aligns with its terrestrial habitat where oxygen is readily available. The ability to thrive in aerobic conditions may also play a role in its survival and competitive success in various soil environments. Overall, R. rhizogenes K84 exemplifies the complex interactions within soil ecosystems, where its nitrogen-fixing capabilities can significantly impact plant health and soil nutrient dynamics, highlighting its potential importance in sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusMartinezella
SpeciesMartinezella rhizogenes
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium rhizogenes K84
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium rhizogenes K84 plasmid pAtK84c, complete sequence.

Gene Summary

Adenine Count

83983 bp

Thymine Count

82897 bp

Guanine Count

109937 bp

Cytosine Count

111352 bp

Genome Length

388169 bp

Protein-coding Genes

362 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinARAD_RS36150Not AvailablePositive19609 - 2016021200.5
rhe_pe00001 family proteinARAD_RS34975Not AvailableNegative20331 - 2076216079.4
imua family proteinARAD_RS31475Not AvailablePositive21045 - 2179726635.9
dna polymerase y family proteinARAD_RS31480Not AvailablePositive21718 - 2322955772.6
error-prone dna polymeraseARAD_RS31485Not AvailablePositive23226 - 26489122141.0
hypothetical proteinARAD_RS31490Not AvailablePositive26724 - 2784242363.5
hypothetical proteinARAD_RS36155Not AvailablePositive28364 - 285406472.5
duf3991 domain-containing proteinARAD_RS31500Not AvailablePositive28757 - 2968034213.5
mobile mystery protein bARAD_RS31505Not AvailableNegative29641 - 3023722756.8
mobile mystery protein aARAD_RS31510Not AvailableNegative30234 - 3069517347.7

Displaying genes 2831 – 2840 of 2986 in total

Metabolites

1755 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1755 metabolites

Health Effects

No health effects information available for this bacterium.