Allorhizobium ampelinum S4

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Gillisella

Description

Allorhizobium ampelinum S4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This organism is adapted to diverse habitats, indicating its ecological versatility and potential to thrive in various environmental conditions. The Gram-negative nature of Allorhizobium ampelinum S4 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages such as resistance to certain antibiotics and the ability to interact with various substrates in its environment. As a rod-shaped bacterium, its morphology may contribute to its motility and colonization abilities, enhancing its ecological interactions. This organism's aerobic requirement indicates that it utilizes oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is readily available. The ability to survive in multiple habitats highlights its potential role in various ecosystems, possibly contributing to nutrient cycling or plant interactions in soil environments. In summary, Allorhizobium ampelinum S4's adaptability to diverse habitats, coupled with its aerobic metabolism, suggests it may play a significant role in promoting soil health and plant growth through its interactions in the rhizosphere. Further studies could elucidate its specific contributions to ecosystem dynamics and its potential applications in agricultural microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusGillisella
SpeciesGillisella ampelina
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Allorhizobium ampelinum S4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Allorhizobium ampelinum S4 plasmid pAtS4b, complete sequence.

Gene Summary

Adenine Count

28460 bp

Thymine Count

28630 bp

Guanine Count

36876 bp

Cytosine Count

36469 bp

Genome Length

130435 bp

Protein-coding Genes

117 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gnat family n-acetyltransferaseAVI_RS11320Not AvailablePositive2387035 - 238756519011.8
dead/deah box helicaseAVI_RS11325Not AvailablePositive2387742 - 238976374059.1
flavin monoamine oxidase family proteinAVI_RS11330Not AvailablePositive2390126 - 239197667841.2
helix-turn-helix domain-containing gnat family n-acetyltransferaseAVI_RS11335Not AvailablePositive2392124 - 239306234614.4
hypothetical proteinAVI_RS11340Not AvailableNegative2393235 - 239357311910.5
nad-dependent dna ligase ligaAVI_RS11345Not AvailableNegative2393822 - 239598178790.5
endonuclease/exonuclease/phosphatase family proteinAVI_RS11350Not AvailableNegative2396043 - 239687030340.1
phospholipase d-like domain-containing proteinAVI_RS11355Not AvailableNegative2396915 - 239836352681.6
dna repair protein recnAVI_RS11360Not AvailableNegative2398514 - 240018759886.2
outer membrane protein assembly factor bamdAVI_RS11365Not AvailableNegative2400234 - 240110332539.6

Displaying genes 4591 – 4600 of 5805 in total

Metabolites

1889 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000400(R)-10-hydroxyoctadecanoateC18H35O3Chemical structure of (R)-10-hydroxyoctadecanoateNot available
Average299.476Da
Monoisotopic299.2591686Da

Displaying 1–10 of 1889 metabolites

Health Effects

Health ConditionRelationReference
Crown gallCausesPMC10811719

Displaying health effects 1 – 1 of 1 in total