Haloferax volcanii DS2

RodNon-motileAerobe

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Haloferax

Description

Haloferax volcanii (strain ATCC 29605 / DSM 3757 / IFO 14742 / NCIMB 2012 / DS2) is a moderate halophilic archaeon isolated from bottom sediment from the Dead Sea. H.volcanii possesses the properties of the halobacteria, but differs from the known species in two important respects; the cells are disc shaped and often cupped when grown under optimum conditions, and the optimum requirements for sodium chloride is in the range 1.7-2.5 molar which is about half of that generally reported for the halobacteria. The optimum sodium chloride concentration for growth is close to that found in the Dead Sea and the tolerance for magnesium chloride is very high. (adapted from PMID: 1190944 and 20333302). (HAMAP: HALVD)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHaloferax
SpeciesHaloferax volcanii
StrainDS2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Haloferax volcanii DS2
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Haloferax volcanii DS2 plasmid pHV1, complete sequence.

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

78 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
creatininase family proteinHVO_RS03100Not AvailablePositive291026 - 29182628338.9
abc transporter substrate-binding proteinHVO_RS03105Not AvailablePositive291981 - 29325246188.9
carbohydrate abc transporter permeaseHVO_RS03110Not AvailablePositive293262 - 29420034548.6
carbohydrate abc transporter permeaseHVO_RS03115Not AvailablePositive294197 - 29504230970.8
hypothetical proteinHVO_RS03120Not AvailablePositive295087 - 29623542246.1
mandelate racemase/muconate lactonizing enzyme family proteinHVO_RS03125Not AvailablePositive296277 - 29744342482.2
sdr family nad(p)-dependent oxidoreductaseHVO_RS03130Not AvailablePositive297495 - 29833729916.0
rida family proteinHVO_RS03135Not AvailablePositive298349 - 29872313331.6
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolaseHVO_RS03140Not AvailableNegative298924 - 29957121975.7
metal abc transporter permeaseHVO_RS21215Not AvailablePositive299710 - 2998414661.54

Displaying genes 341 – 350 of 683 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

47 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000645L-arabinonateC5H9O6Chemical structure of L-arabinonateNot available
Average165.122Da
Monoisotopic165.0404616Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm00011795-hydroxyisourateC5H4N4O4Chemical structure of 5-hydroxyisourateNot available
Average184.1097Da
Monoisotopic184.0232546Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001988(R)-mevalonateC6H11O4Chemical structure of (R)-mevalonateNot available
Average147.1491Da
Monoisotopic147.0657338Da
BASm0002002glyoxylateC2HO3Chemical structure of glyoxylateNot available
Average73.0275Da
Monoisotopic72.9925689Da
BASm0002131(3S)-hydroxy-3-methylglutaryl-CoAC27H39N7O20P3SChemical structure of (3S)-hydroxy-3-methylglutaryl-CoANot available
Average906.62Da
Monoisotopic906.1183419Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 47 metabolites

Health Effects

No health effects information available for this bacterium.