Dictyoglomus thermophilum H-6-12

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Dictyoglomota

Class

Dictyoglomia

Order

Dictyoglomales

Family

Dictyoglomaceae

Genus

Dictyoglomus

Description

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumDictyoglomota
ClassDictyoglomia
OrderDictyoglomales
FamilyDictyoglomaceae
GenusDictyoglomus
SpeciesDictyoglomus thermophilum
StrainH-6-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dictyoglomus thermophilum H-6-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature78
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Dictyoglomus thermophilum H-6-12, complete sequence.

Gene Summary

Adenine Count

659799 bp

Thymine Count

638869 bp

Guanine Count

339783 bp

Cytosine Count

321536 bp

Genome Length

1959987 bp

Protein-coding Genes

1895 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-glucose dehydrogenase family proteinDICTH_RS02640Not AvailableNegative558504 - 55980548857.8
cysteine desulfurase nifsDICTH_RS02645Not AvailableNegative559855 - 56103944230.2
trna (n6-threonylcarbamoyladenosine(37)-n6)-methyltransferase trmoDICTH_RS09835Not AvailableNegative561095 - 56195031332.7
glycosyltransferase family 2 proteinDICTH_RS02660Not AvailablePositive562135 - 56311837587.3
hypothetical proteinDICTH_RS10095Not AvailablePositive563111 - 56472762977.2
flippase-like domain-containing proteinDICTH_RS10055Not AvailablePositive564687 - 56696388124.5
duf3857 domain-containing proteinDICTH_RS02675Not AvailableNegative566960 - 570649145396.0
laci family dna-binding transcriptional regulatorDICTH_RS02680Not AvailablePositive570793 - 57180637797.2
b12-binding domain-containing proteinDICTH_RS02685Not AvailablePositive571902 - 57254022606.0
askha domain-containing proteinDICTH_RS02690Not AvailablePositive572541 - 57427164376.5

Displaying genes 541 – 550 of 1950 in total

Metabolites

750 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da

Displaying 1–10 of 750 metabolites

Health Effects

No health effects information available for this bacterium.