Dictyoglomus thermophilum H-6-12

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Dictyoglomota

Class

Dictyoglomia

Order

Dictyoglomales

Family

Dictyoglomaceae

Genus

Dictyoglomus

Description

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumDictyoglomota
ClassDictyoglomia
OrderDictyoglomales
FamilyDictyoglomaceae
GenusDictyoglomus
SpeciesDictyoglomus thermophilum
StrainH-6-12

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dictyoglomus thermophilum H-6-12
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature78
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementChains - Pairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Dictyoglomus thermophilum H-6-12, complete sequence.

Gene Summary

Adenine Count

659799 bp

Thymine Count

638869 bp

Guanine Count

339783 bp

Cytosine Count

321536 bp

Genome Length

1959987 bp

Protein-coding Genes

1895 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homocitrate synthaseDICTH_RS07335Not AvailablePositive1460954 - 146210242330.3
3-isopropylmalate dehydratase large subunitDICTH_RS07340Not AvailablePositive1462108 - 146336445010.7
3-isopropylmalate dehydratase small subunitDICTH_RS07345Not AvailablePositive1463378 - 146387818666.6
iron-containing alcohol dehydrogenaseDICTH_RS07350Not AvailablePositive1463879 - 146503042367.8
glucose-1-phosphate thymidylyltransferaseDICTH_RS07355Not AvailableNegative1465027 - 146571024858.3
methylenetetrahydrofolate reductaseDICTH_RS07360Not AvailableNegative1465727 - 146659332320.7
methylenetetrahydrofolate reductase c-terminal domain-containing proteinDICTH_RS07365Not AvailableNegative1466590 - 146719522843.0
bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolaseDICTH_RS07370Not AvailableNegative1467179 - 146803031536.7
formate--tetrahydrofolate ligaseDICTH_RS07375Not AvailableNegative1468046 - 146968059658.4
metallophosphoesterase family proteinDICTH_RS07380Not AvailableNegative1469695 - 147019218875.9

Displaying genes 1481 – 1490 of 1950 in total

Metabolites

750 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001808corynebactinC39H42N6O18Chemical structure of corynebactinNot available
Average882.789Da
Monoisotopic882.2555585Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da

Displaying 1–10 of 750 metabolites

Health Effects

No health effects information available for this bacterium.