Dictyoglomus thermophilum H-6-12

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Dictyoglomota

Class

Dictyoglomia

Order

Dictyoglomales

Family

Dictyoglomaceae

Genus

Dictyoglomus

Description

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Dictyoglomota
Class	Dictyoglomia
Order	Dictyoglomales
Family	Dictyoglomaceae
Genus	Dictyoglomus
Species	Dictyoglomus thermophilum
Strain	H-6-12

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	78
Temperature range	Thermophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Chains - Pairs - Singles
Sporulation	Nonsporulating
Energy source	Chemoorganotroph
Pathogenicity	No

Genome Summary

Dictyoglomus thermophilum H-6-12, complete sequence.

NC_011297.1

Gene Summary

Adenine Count

659799 bp

Thymine Count

638869 bp

Guanine Count

339783 bp

Cytosine Count

321536 bp

Genome Length

1959987 bp

Protein-coding Genes

1895 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
dna topoisomerase (atp-hydrolyzing) subunit b	DICTH_RS06940	Not Available	Negative	1373791 - 1375698	72132.9
duf721 domain-containing protein	DICTH_RS06945	Not Available	Negative	1375676 - 1376158	18788.1
dna replication/repair protein recf	DICTH_RS06950	Not Available	Negative	1376151 - 1377230	42611.7
s4 domain-containing protein yaaa	DICTH_RS06955	Not Available	Negative	1377231 - 1377446	7972.79
dna polymerase iii subunit beta	DICTH_RS06960	Not Available	Negative	1377443 - 1378546	41215.6
rrf2 family transcriptional regulator	DICTH_RS06965	Not Available	Positive	1378694 - 1379128	16682.4
fe-s cluster assembly atpase sufc	DICTH_RS06970	Not Available	Positive	1379125 - 1379877	28492.8
sufb/sufd family protein	DICTH_RS06975	Not Available	Positive	1379858 - 1381093	46558.9
16s rrna (guanine(527)-n(7))-methyltransferase rsmg	DICTH_RS06980	Not Available	Positive	1381103 - 1381825	27884.1
gnat family n-acetyltransferase	DICTH_RS06985	Not Available	Positive	1381899 - 1383029	43749.2

Displaying genes 1401 – 1410 of 1950 in total

Pathways

592 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Glycolysis and Pyruvate Dehydrogenase

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

tRNA Charging

Glycine Biosynthesis

Show All 592 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2	Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001661	Cu(2+)Cu	`7440-50-8`	Average63.546Da Monoisotopic62.929601079Da
BASm0001808	corynebactinC39H42N6O18	Not available	Average882.789Da Monoisotopic882.2555585Da
BASm0001861	(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2	Not available	Average188.226Da Monoisotopic188.0837296Da

Displaying 1–10 of 750 metabolites

Health Effects

No health effects information available for this bacterium.