Dictyoglomus thermophilum H-6-12

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Dictyoglomota

Class

Dictyoglomia

Order

Dictyoglomales

Family

Dictyoglomaceae

Genus

Dictyoglomus

Description

Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) is a Gram-negative, obligately anaerobic and extremely thermophilic bacterium isolated from a slightly alkaline hot spring (Tsuetae Hot Spring) in Kumamoto Prefecture, Japan. It has an optimum temperature for growth of 78 degrees Celsius and forms a characteristic cell-association structure called 'rotund bodies'. (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Dictyoglomota
Class	Dictyoglomia
Order	Dictyoglomales
Family	Dictyoglomaceae
Genus	Dictyoglomus
Species	Dictyoglomus thermophilum
Strain	H-6-12

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	No
Flagellar presence	Yes
Number of membranes	2

AI-generated image based on bacteria physiology

Ecology, Host, and Life Cycle
Oxygen requirements	Anaerobe
Optimal temperature	78
Temperature range	Thermophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Chains - Pairs - Singles
Sporulation	Nonsporulating
Energy source	Chemoorganotroph
Pathogenicity	No

Genome Summary

Dictyoglomus thermophilum H-6-12, complete sequence.

NC_011297.1

Gene Summary

Adenine Count

659799 bp

Thymine Count

638869 bp

Guanine Count

339783 bp

Cytosine Count

321536 bp

Genome Length

1959987 bp

Protein-coding Genes

1895 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
ecf transporter s component	DICTH_RS05305	Not Available	Negative	1071556 - 1072272	25873.1
5-formyltetrahydrofolate cyclo-ligase	DICTH_RS05310	Not Available	Positive	1072434 - 1072979	21461.4
tlpa family protein disulfide reductase	DICTH_RS05315	Not Available	Negative	1073106 - 1073618	19719.5
5s ribosomal rna	Not Available	Not Available	Positive	1073831 - 1073947	Not Available
23s ribosomal rna	Not Available	Not Available	Positive	1074009 - 1077024	Not Available
Trna-ala	Not Available	Not Available	Positive	1077090 - 1077165	Not Available
Trna-ile	Not Available	Not Available	Positive	1077188 - 1077264	Not Available
16s ribosomal rna	Not Available	Not Available	Positive	1077333 - 1078880	Not Available
radical sam protein	DICTH_RS05350	Not Available	Negative	1079072 - 1079977	34653.5
tatd family nuclease-associated radical sam protein	DICTH_RS05355	Not Available	Negative	1079981 - 1080583	23014.1

Displaying genes 1071 – 1080 of 1950 in total

Pathways

592 pathways

2,3-Dihydroxybenzoate Biosynthesis

Biosynthesis of Siderophore Group Nonribosomal Peptides

Lysine Biosynthesis

Glycolysis and Pyruvate Dehydrogenase

Palmitate Biosynthesis

Fatty Acid Elongation (Saturated)

tRNA Charging

Glycine Biosynthesis

Show All 592 Pathways

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7	`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3	Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5	Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000553	biphenyl-2,3-diolC12H10O2	Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000989	GlycerolC3H8O3	`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da
BASm0001225	dodecanoateC12H23O2	Not available	Average199.3098Da Monoisotopic199.169805Da
BASm0001661	Cu(2+)Cu	`7440-50-8`	Average63.546Da Monoisotopic62.929601079Da
BASm0001808	corynebactinC39H42N6O18	Not available	Average882.789Da Monoisotopic882.2555585Da
BASm0001861	(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2	Not available	Average188.226Da Monoisotopic188.0837296Da

Displaying 1–10 of 750 metabolites

Health Effects

No health effects information available for this bacterium.