Shigella sonnei Ss046

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei Ss046 is a gram-negative, rod-shaped bacterium that thrives optimally at moderate temperatures, categorizing it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds and is a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions. This microbe primarily inhabits the human gastrointestinal tract, being a causative agent of bacillary dysentery, or shigellosis. The gram-negative cell wall structure of S. sonnei consists of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This unique composition contributes to its virulence and resistance to certain antibiotics, making infections challenging to treat. The rod shape enhances its motility within the viscous environment of the intestinal lumen, facilitating colonization and invasion of epithelial cells. As a mesophilic organism, S. sonnei grows best at temperatures ranging from 30°C to 37°C, mirroring the body temperature of its human host. This temperature preference is crucial for its survival and pathogenicity. Being a facultative anaerobe enables S. sonnei to adapt to varying oxygen levels within the intestine, where it ferment carbohydrates to generate energy, even in low-oxygen environments. Shigella sonnei is notable for its ability to cause severe gastrointestinal illness with a low infectious dose—estimated at just 10 to 100 bacteria. This efficiency allows it to spread rapidly, particularly in crowded and unsanitary conditions, such as refugee camps or during outbreaks in institutional settings. The bacterium also has been the subject of research aimed at understanding its pathogenic mechanisms and potential vaccine development, given its significant public health implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainSs046

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei Ss046
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Shigella sonnei Ss046 plasmid pSS046_spC, complete sequence.

Gene Summary

Adenine Count

529 bp

Thymine Count

582 bp

Guanine Count

551 bp

Cytosine Count

439 bp

Genome Length

2101 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfonamide-resistant dihydropteroate synthase sul2SSON_RS26635Not AvailablePositive5780 - 659528471.1
aminoglycoside o-phosphotransferase aph(3'')-ibSSON_RS26640Not AvailablePositive6656 - 745929588.2
aminoglycoside o-phosphotransferase aph(6)-idSSON_RS26645Not AvailablePositive7459 - 829530825.7
is3 family transposaseSSON_RS25285Not AvailableNegative191 - 56312353.5
is3 family transposaseSSON_RS32780Not AvailablePositive807 - 9264907.91
type 3 secretion system effector ospbSSON_RS25295Not AvailablePositive1176 - 204232422.7
pap2 family phosphatase phon2SSON_RS25300Not AvailablePositive2371 - 311127561.5
hypothetical proteinSSON_RS34125Not AvailablePositive3184 - 33064362.17
is3 family transposaseSSON_RS32170Not AvailableNegative3464 - 36286128.39
is630-like element is630 family transposaseSSON_RS25310Not AvailablePositive3729 - 476039455.9

Displaying genes 11 – 20 of 5179 in total

Metabolites

2305 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 2305 metabolites

Health Effects

No health effects information available for this bacterium.