Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421639_101970 | Not Available | Negative | 1069068 - 1070042 | 37637.8 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_101971 | Not Available | Negative | 1070241 - 1071710 | 55171.9 |
| transcriptional regulator, arac family | SAMN05421639_101972 | Not Available | Negative | 1071850 - 1072968 | 43117.4 |
| two-component system, ompr family, phosphate regulon response regulator phob/two-component system, ntrc family, response regulator atoc | SAMN05421639_101973 | Not Available | Positive | 1073280 - 1073636 | 13271.5 |
| hypothetical protein | SAMN05421639_101974 | Not Available | Negative | 1073775 - 1074317 | 20120.1 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_101975 | Not Available | Negative | 1074674 - 1075729 | 40224.6 |
| protein of unknown function | SAMN05421639_101976 | Not Available | Positive | 1075988 - 1076686 | 26472.1 |
| glpgli family protein | SAMN05421639_101977 | Not Available | Positive | 1077419 - 1078234 | 31757.3 |
| short c-terminal domain-containing protein | SAMN05421639_101978 | Not Available | Negative | 1078855 - 1079508 | 24786.8 |
| hypothetical protein | SAMN05421639_101979 | Not Available | Negative | 1079610 - 1080161 | 21058.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
