Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mreb | SAMN05421639_101960 | Not Available | Positive | 1053921 - 1054949 | 37378.0 |
| l-glutaminase | SAMN05421639_101961 | Not Available | Negative | 1055063 - 1056076 | 37106.6 |
| hypothetical protein | SAMN05421639_101962 | Not Available | Positive | 1056363 - 1056779 | 14916.3 |
| sarcosine oxidase/sarcosine oxidase / l-pipecolate oxidase | SAMN05421639_101963 | Not Available | Positive | 1057156 - 1058343 | 44634.1 |
| flavin containing amine oxidoreductase | SAMN05421639_101964 | Not Available | Positive | 1058358 - 1060121 | 67749.3 |
| hypothetical protein | SAMN05421639_101965 | Not Available | Positive | 1060615 - 1060815 | 7568.95 |
| rhs repeat-associated core domain-containing protein | SAMN05421639_101966 | Not Available | Positive | 1061713 - 1066602 | 183336.0 |
| hypothetical protein | SAMN05421639_101967 | Not Available | Positive | 1066677 - 1066808 | 4689.65 |
| hypothetical protein | SAMN05421639_101968 | Not Available | Positive | 1067118 - 1067315 | 7229.67 |
| cubico group peptidase, beta-lactamase class c family | SAMN05421639_101969 | Not Available | Negative | 1067441 - 1068928 | 55975.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
