Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein, contains a nrps condensation (elongation) domain | SAMN05421639_101950 | Not Available | Negative | 1031394 - 1032665 | 48331.8 |
| glycosyltransferase, mgt family | SAMN05421639_101951 | Not Available | Negative | 1032670 - 1035075 | 89325.5 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421639_101952 | Not Available | Negative | 1035068 - 1035862 | 30067.2 |
| acyl carrier protein | SAMN05421639_101953 | Not Available | Negative | 1035853 - 1036152 | 11511.7 |
| acyl transferase domain-containing protein | SAMN05421639_101954 | Not Available | Negative | 1036140 - 1040372 | 155923.0 |
| polyketide-type polyunsaturated fatty acid synthase pfaa | SAMN05421639_101955 | Not Available | Negative | 1040392 - 1047393 | 255296.0 |
| hypothetical protein | SAMN05421639_101956 | Not Available | Negative | 1048011 - 1048619 | 23462.8 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421639_101957 | Not Available | Negative | 1048757 - 1051129 | 88857.1 |
| histidine kinase | SAMN05421639_101958 | Not Available | Positive | 1051240 - 1052907 | 64022.5 |
| two component transcriptional regulator, lyttr family | SAMN05421639_101959 | Not Available | Positive | 1052904 - 1053602 | 26316.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
