Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101940 | Not Available | Negative | 1020310 - 1021107 | 30314.8 |
| hypothetical protein | SAMN05421639_101941 | Not Available | Negative | 1021188 - 1021733 | 20148.2 |
| hypothetical protein | SAMN05421639_101942 | Not Available | Negative | 1022106 - 1022606 | 18942.2 |
| helix-turn-helix domain-containing protein | SAMN05421639_101943 | Not Available | Positive | 1022857 - 1023264 | 16020.3 |
| taqi-like c-terminal specificity domain-containing protein | SAMN05421639_101944 | Not Available | Negative | 1023355 - 1025253 | 74061.0 |
| hypothetical protein | SAMN05421639_101945 | Not Available | Negative | 1025254 - 1026021 | 30434.2 |
| hypothetical protein | SAMN05421639_101946 | Not Available | Negative | 1026018 - 1027073 | 41888.9 |
| signal transduction histidine kinase | SAMN05421639_101947 | Not Available | Negative | 1027063 - 1029390 | 89307.3 |
| hypothetical protein | SAMN05421639_101948 | Not Available | Negative | 1029599 - 1030147 | 20863.4 |
| uncharacterized protein, contains a nrps condensation (elongation) domain | SAMN05421639_101949 | Not Available | Negative | 1030144 - 1031397 | 48739.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
