Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101920 | Not Available | Negative | 998583 - 999473 | 34464.3 |
| hypothetical protein | SAMN05421639_101921 | Not Available | Negative | 999421 - 1000833 | 53716.7 |
| hypothetical protein | SAMN05421639_101922 | Not Available | Negative | 1000821 - 1001525 | 27500.9 |
| uncharacterized alpha/beta hydrolase domain | SAMN05421639_101923 | Not Available | Negative | 1001528 - 1003327 | 68941.1 |
| protein of unknown function | SAMN05421639_101924 | Not Available | Negative | 1003338 - 1004420 | 40394.1 |
| hypothetical protein | SAMN05421639_101925 | Not Available | Negative | 1004499 - 1004894 | 14688.8 |
| uncharacterized conserved protein, implicated in type vi secretion and phage assembly | SAMN05421639_101926 | Not Available | Negative | 1004937 - 1006796 | 67744.4 |
| hypothetical protein | SAMN05421639_101927 | Not Available | Negative | 1007058 - 1007465 | 14909.4 |
| osmoprotectant transport system permease protein | SAMN05421639_101928 | Not Available | Negative | 1007679 - 1009244 | 57529.3 |
| osmoprotectant transport system atp-binding protein | SAMN05421639_101929 | Not Available | Negative | 1009241 - 1010161 | 34517.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
