Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectinesterase | SAMN05421639_101910 | Not Available | Positive | 989052 - 990065 | 37918.5 |
| lysophospholipase l1 | SAMN05421639_101911 | Not Available | Positive | 990215 - 990952 | 28178.0 |
| cupin domain-containing protein | SAMN05421639_101912 | Not Available | Positive | 991035 - 991400 | 13703.3 |
| pectate lyase | SAMN05421639_101913 | Not Available | Positive | 991796 - 992911 | 39278.4 |
| pectate lyase, pela/pel-15e family | SAMN05421639_101914 | Not Available | Negative | 993163 - 994182 | 38331.7 |
| protein of unknown function | SAMN05421639_101915 | Not Available | Negative | 994193 - 995371 | 44800.6 |
| hypothetical protein | SAMN05421639_101916 | Not Available | Negative | 995566 - 996510 | 36741.8 |
| hypothetical protein | SAMN05421639_101917 | Not Available | Negative | 996628 - 997140 | 20225.7 |
| hypothetical protein | SAMN05421639_101918 | Not Available | Negative | 997235 - 997582 | 13203.1 |
| hypothetical protein | SAMN05421639_101919 | Not Available | Negative | 997707 - 998393 | 27204.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
