Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN05421639_101900 | Not Available | Positive | 973825 - 976830 | 110524.0 |
| starch-binding associating with outer membrane | SAMN05421639_101901 | Not Available | Positive | 976841 - 978676 | 68254.4 |
| pectinesterase | SAMN05421639_101902 | Not Available | Positive | 978757 - 979779 | 37411.9 |
| hypothetical protein | SAMN05421639_101903 | Not Available | Positive | 979804 - 981222 | 52245.4 |
| protein of unknown function | SAMN05421639_101904 | Not Available | Positive | 981271 - 982278 | 37993.1 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN05421639_101905 | Not Available | Positive | 982290 - 983549 | 47723.0 |
| beta-xylosidase | SAMN05421639_101906 | Not Available | Positive | 983672 - 985312 | 61313.6 |
| lysophospholipase l1 | SAMN05421639_101907 | Not Available | Positive | 985375 - 986220 | 32321.5 |
| glycosyl hydrolases family 28 | SAMN05421639_101908 | Not Available | Positive | 986222 - 987889 | 60655.7 |
| pectinesterase | SAMN05421639_101909 | Not Available | Positive | 987986 - 988900 | 34074.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
