Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN05421639_101890 | Not Available | Positive | 961891 - 962919 | 38198.9 |
| hypothetical protein | SAMN05421639_101891 | Not Available | Negative | 963063 - 963170 | 3880.62 |
| altronate hydrolase | SAMN05421639_101892 | Not Available | Negative | 963197 - 964810 | 58336.8 |
| tagaturonate reductase | SAMN05421639_101893 | Not Available | Negative | 964817 - 966316 | 57494.5 |
| mfs transporter, acs family, hexuronate transporter | SAMN05421639_101894 | Not Available | Negative | 966427 - 967956 | 56954.7 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN05421639_101895 | Not Available | Negative | 968202 - 968879 | 24442.6 |
| 2-dehydro-3-deoxygluconokinase | SAMN05421639_101896 | Not Available | Negative | 968882 - 969889 | 36892.7 |
| d-glucuronate isomerase | SAMN05421639_101897 | Not Available | Negative | 969900 - 971297 | 53570.5 |
| gluconate 5-dehydrogenase | SAMN05421639_101898 | Not Available | Negative | 971316 - 972098 | 27896.8 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | SAMN05421639_101899 | Not Available | Negative | 972107 - 972943 | 31736.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
