Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101880 | Not Available | Positive | 944776 - 945294 | 18935.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_101881 | Not Available | Positive | 945316 - 948435 | 114002.0 |
| protein of unknown function duf262 | SAMN05421639_101882 | Not Available | Negative | 948560 - 950857 | 90467.3 |
| uncharacterized conserved protein, contains parb-like and hnh nuclease domains | SAMN05421639_101883 | Not Available | Negative | 950862 - 952724 | 73849.7 |
| nadph-dependent ferric siderophore reductase, contains fad-binding and sip domains | SAMN05421639_101884 | Not Available | Negative | 952958 - 953680 | 27261.4 |
| arac-type dna-binding protein | SAMN05421639_101885 | Not Available | Negative | 953769 - 954635 | 33072.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421639_101886 | Not Available | Negative | 954799 - 956331 | 55785.5 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05421639_101887 | Not Available | Negative | 956567 - 957202 | 23179.1 |
| tonb-dependent receptor plug domain | SAMN05421639_101888 | Not Available | Positive | 957815 - 960145 | 87265.0 |
| protein of unknown function | SAMN05421639_101889 | Not Available | Positive | 960149 - 960958 | 29580.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
