Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-methionine transport system permease protein | SAMN05421639_101860 | Not Available | Positive | 920569 - 921225 | 23410.6 |
| d-methionine transport system substrate-binding protein | SAMN05421639_101861 | Not Available | Positive | 921314 - 922120 | 29584.6 |
| beta-glucosidase | SAMN05421639_101862 | Not Available | Positive | 922554 - 924815 | 83268.8 |
| hnh endonuclease | SAMN05421639_101863 | Not Available | Negative | 924898 - 925836 | 36310.3 |
| fic family protein | SAMN05421639_101864 | Not Available | Negative | 925947 - 926906 | 36989.8 |
| hypothetical protein | SAMN05421639_101865 | Not Available | Negative | 927069 - 927257 | 6692.96 |
| protein of unknown function | SAMN05421639_101866 | Not Available | Negative | 927591 - 928199 | 23590.3 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05421639_101867 | Not Available | Negative | 928206 - 929636 | 52149.8 |
| hydrophobe/amphiphile efflux-1 (hae1) family protein | SAMN05421639_101868 | Not Available | Negative | 929642 - 932782 | 113917.0 |
| membrane fusion protein, multidrug efflux system | SAMN05421639_101869 | Not Available | Negative | 932792 - 933937 | 41879.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
