Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, hxlr family | SAMN05421639_101830 | Not Available | Positive | 887471 - 887857 | 14618.2 |
| methyltransferase domain-containing protein | SAMN05421639_101831 | Not Available | Negative | 887865 - 888596 | 27692.1 |
| pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (e1) component | SAMN05421639_101832 | Not Available | Negative | 888701 - 891133 | 90779.3 |
| hypothetical protein | SAMN05421639_101833 | Not Available | Positive | 891269 - 891565 | 11047.8 |
| octaprenyl-diphosphate synthase | SAMN05421639_101834 | Not Available | Negative | 891725 - 892702 | 37614.0 |
| hypothetical protein | SAMN05421639_101835 | Not Available | Negative | 892776 - 893654 | 33589.8 |
| sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily | SAMN05421639_101836 | Not Available | Negative | 893958 - 894899 | 37096.9 |
| 23s rrna m(2)a-2503 methyltransferase | SAMN05421639_101837 | Not Available | Negative | 894972 - 896006 | 39020.2 |
| s-adenosylmethionine--trna ribosyltransferase-isomerase | SAMN05421639_101838 | Not Available | Negative | 896120 - 897169 | 40039.1 |
| uncharacterized conserved protein, aim24 family | SAMN05421639_101839 | Not Available | Positive | 897295 - 898044 | 27522.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
