Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN05421639_101790 | Not Available | Negative | 844424 - 846364 | 72561.7 |
| yvbh-like oligomerisation region | SAMN05421639_101791 | Not Available | Negative | 846443 - 847057 | 23306.6 |
| dihydrolipoamide dehydrogenase | SAMN05421639_101792 | Not Available | Negative | 847085 - 848473 | 49434.7 |
| hypothetical protein | SAMN05421639_101793 | Not Available | Positive | 848757 - 849641 | 31235.5 |
| hypothetical protein | SAMN05421639_101794 | Not Available | Negative | 849764 - 850018 | 9921.53 |
| beta-glucosidase | SAMN05421639_101795 | Not Available | Negative | 850282 - 852951 | 99711.0 |
| alpha-l-fucosidase | SAMN05421639_101796 | Not Available | Negative | 852948 - 854393 | 56080.1 |
| hypothetical protein | SAMN05421639_101797 | Not Available | Negative | 854445 - 855344 | 33686.6 |
| hypothetical protein | SAMN05421639_101798 | Not Available | Negative | 855431 - 856135 | 27959.5 |
| hypothetical protein | SAMN05421639_101799 | Not Available | Negative | 856196 - 856651 | 17588.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
