Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ghkl domain-containing protein | SAMN05421639_101780 | Not Available | Positive | 835495 - 836553 | 40888.2 |
| two component transcriptional regulator, lyttr family | SAMN05421639_101781 | Not Available | Positive | 836550 - 837248 | 26601.4 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN05421639_101782 | Not Available | Negative | 837300 - 837800 | 19377.2 |
| protein of unknown function | SAMN05421639_101783 | Not Available | Positive | 837938 - 838417 | 18001.5 |
| hypothetical protein | SAMN05421639_101784 | Not Available | Positive | 838724 - 839293 | 21297.5 |
| protein involved in gliding motility glda | SAMN05421639_101785 | Not Available | Positive | 839376 - 840077 | 25829.6 |
| hypothetical protein | SAMN05421639_101786 | Not Available | Positive | 840086 - 841126 | 40475.9 |
| hypothetical protein | SAMN05421639_101787 | Not Available | Positive | 841183 - 841629 | 16713.9 |
| adenine deaminase | SAMN05421639_101788 | Not Available | Positive | 841795 - 843420 | 59988.4 |
| nte family protein | SAMN05421639_101789 | Not Available | Negative | 843486 - 844277 | 29431.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
