Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Chryseobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Chryseobacterium |
| Species | Chryseobacterium shigense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | fresh lactic acid beverage |
| Biotic relationship | Not Available |
| Host(s) | Oncorhynchus mykiss |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1524130 bp
Thymine Count
1537963 bp
Guanine Count
900959 bp
Cytosine Count
932865 bp
Genome Length
4895917 bp
Protein-coding Genes
4422 genes
Non-Coding Genes
76 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421639_101770 | Not Available | Negative | 820199 - 820786 | 22169.2 |
| antitoxin component ywqk of the ywqjk toxin-antitoxin module | SAMN05421639_101771 | Not Available | Negative | 820873 - 822408 | 58492.1 |
| hypothetical protein | SAMN05421639_101772 | Not Available | Negative | 822690 - 823496 | 30831.6 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN05421639_101773 | Not Available | Positive | 823882 - 826134 | 87499.8 |
| two component transcriptional regulator, luxr family | SAMN05421639_101774 | Not Available | Positive | 826127 - 826756 | 23133.5 |
| exodeoxyribonuclease i subunit d | SAMN05421639_101775 | Not Available | Positive | 827133 - 828368 | 46764.9 |
| exonuclease sbcc | SAMN05421639_101776 | Not Available | Positive | 828370 - 832107 | 141131.0 |
| enterochelin esterase | SAMN05421639_101777 | Not Available | Negative | 832180 - 833310 | 42770.2 |
| hypothetical protein | SAMN05421639_101778 | Not Available | Positive | 833631 - 834089 | 17546.9 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05421639_101779 | Not Available | Negative | 834184 - 835308 | 43349.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
